A cross-encoder reranker model fine-tuned for biomedical ontology entity normalization, designed to work with the BOND (Biomedical Ontology Neural Disambiguation) system. This model is a cross-encoder reranker trained to improve the accuracy of entity normalization by re-ranking candidate ontology terms retrieved by BOND's initial retrieval stage. It takes a query-candidate pair and outputs a relevance score. The model was trained on biomedical entity normalization data covering multiple ontologies including:
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