Pre-trained language models have attracted increasing attention in the biomedical domain, inspired by their great success in the general natural language domain. Among the two main branches of pre-trained language models in the general language domain, i.e. BERT (and its variants) and GPT (and its variants), the first one has been extensively studied in the biomedical domain, such as BioBERT and PubMedBERT. While they have achieved great success on a variety of discriminative downstream biomedical tasks, the lack of generation ability constrains their application scope. In this paper, we propose BioGPT, a domain-specific generative Transformer language model pre-trained on large-scale biomedical literature. We evaluate BioGPT on six biomedical natural language processing tasks and demonstrate that our model outperforms previous models on most tasks. Especially, we get 44.98%, 38.42% and 40.76% F1 score on BC5CDR, KD-DTI and DDI end-to-end relation extraction tasks, respectively, and 78.2% accuracy on PubMedQA, creating a new record. Our case study on text generation further demonstrates the advantage of BioGPT on biomedical literature to generate fluent descriptions for biomedical terms. You can use this model directly with a pipeline for text generation. Since the generation relies on some randomness, we set a seed for reproducibility:

翻訳待ち・原文を表示

テキスト生成

入力テキスト→ 出力テキスト

料金未確認マルチモーダル・チャネル料金は個別に確認

詳細を見る ↗

比較に追加出典・文書 ↗

BioGPT-Large

Microsoft

基础档案已收录，详细介绍后续补充。可先查看厂商、分类与来源。

基本情報を収録・詳細は順次追加

テキスト生成

入力テキスト→ 出力テキスト

料金未確認マルチモーダル・チャネル料金は個別に確認

詳細を見る ↗

比較に追加出典・文書 ↗

BioGPT-Large-PubMedQA

Microsoft

基础档案已收录，详细介绍后续补充。可先查看厂商、分类与来源。

基本情報を収録・詳細は順次追加

テキスト生成

入力テキスト→ 出力テキスト

料金未確認マルチモーダル・チャネル料金は個別に確認

詳細を見る ↗

比較に追加出典・文書 ↗

BiomedCLIP-PubMedBERT_256-vit_base_patch16_224

Microsoft

- Training Data - Model Use - Reference - Limitations - Further Information We have released BiomedCLIP Data Pipeline at https://github.com/microsoft/BiomedCLIP_data_pipeline, which automatically downloads and processes a set of articles from the PubMed Central Open Access dataset. BiomedCLIP builds upon the PMC-15M dataset, which is a large-scale parallel image-text dataset generated by this data pipeline for biomedical vision-language processing. It contains 15 million figure-caption pairs extracted from biomedical research articles in PubMed Central and covers a diverse range of biomedical image types, such as microscopy, radiography, histology, and more. Please refer to this example notebook.

翻訳待ち・原文を表示

分類準備中

入力未確認→ 出力未確認

料金未確認マルチモーダル・チャネル料金は個別に確認

詳細を見る ↗

比較に追加出典・文書 ↗

BiomedNLP-BiomedBERT-base-uncased-abstract

Microsoft

* This model was previously named **"PubMedBERT (abstracts)"**. * You can either adopt the new model name "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract" or update your `transformers` library to version 4.22+ if you need to refer to the old name. Pretraining large neural language models, such as BERT, has led to impressive gains on many natural language processing (NLP) tasks. However, most pretraining efforts focus on general domain corpora, such as newswire and Web. A prevailing assumption is that even domain-specific pretraining can benefit by starting from general-domain language models. Recent work shows that for domains with abundant unlabeled text, such as biomedicine, pretraining language models from scratch results in substantial gains over continual pretraining of general-domain language models. This BiomedBERT is pretrained from scratch using _abstracts_ from PubMed. This model achieves state-of-the-art performance on several biomedical NLP tasks, as shown on the Biomedical Language Understanding and Reasoning Benchmark.

翻訳待ち・原文を表示

穴埋め・マスク

入力テキスト→ 出力テキスト

料金未確認マルチモーダル・チャネル料金は個別に確認

詳細を見る ↗

比較に追加出典・文書 ↗

BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext

Microsoft

* This model was previously named **"PubMedBERT (abstracts + full text)"**. * You can either adopt the new model name "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext" or update your `transformers` library to version 4.22+ if you need to refer to the old name. Pretraining large neural language models, such as BERT, has led to impressive gains on many natural language processing (NLP) tasks. However, most pretraining efforts focus on general domain corpora, such as newswire and Web. A prevailing assumption is that even domain-specific pretraining can benefit by starting from general-domain language models. Recent work shows that for domains with abundant unlabeled text, such as biomedicine, pretraining language models from scratch results in substantial gains over continual pretraining of general-domain language models. BiomedBERT is pretrained from scratch using _abstracts_ from PubMed and _full-text_ articles from PubMedCentral. This model achieves state-of-the-art performance on many biomedical NLP tasks, and currently holds the top score on the Biomedical Language Understanding and Reasoning Benchmark.

翻訳待ち・原文を表示

穴埋め・マスク

入力テキスト→ 出力テキスト

料金未確認マルチモーダル・チャネル料金は個別に確認

詳細を見る ↗

比較に追加出典・文書 ↗