biogpt

Model overview

Pre-trained language models have attracted increasing attention in the biomedical domain, inspired by their great success in the general natural language domain. Among the two main branches of pre-trained language models in the general language domain, i.e. BERT (and its variants) and GPT (and its variants), the first one has been extensively studied in the biomedical domain, such as BioBERT and PubMedBERT. While they have achieved great success on a variety of discriminative downstream biomedical tasks, the lack of generation ability constrains their application scope. In this paper, we propose BioGPT, a domain-specific generative Transformer language model pre-trained on large-scale biomedical literature. We evaluate BioGPT on six biomedical natural language processing tasks and demonstrate that our model outperforms previous models on most tasks. Especially, we get 44.98%, 38.42% and 40.76% F1 score on BC5CDR, KD-DTI and DDI end-to-end relation extraction tasks, respectively, and 78.2% accuracy on PubMedQA, creating a new record. Our case study on text generation further demonstrates the advantage of BioGPT on biomedical literature to generate fluent descriptions for biomedical terms. You can use this model directly with a pipeline for text generation. Since the generation relies on some randomness, we set a seed for reproducibility:

Key features

特点摘要待依据来源补齐，不凭模型名称推断能力。

Limitations & considerations

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Source prices & cost analysis

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Public benchmarks & run configuration

暂无已采集的可核验公开评分。模型未上榜不代表能力较低。

Frequently asked questions

Sources & traceability

许可证：mit。模型介绍与第三方评测均以原来源的具体版本和方法为准。